Hi vlm,
The complications might be handled by transferring the data from the entry table (in the format/layout in your example) to a second table used to feed the x/y chart. The transfer could be continuous, using a formula, or via a script, requiring the used to trigger the script with a menu item choice each time the map is to be updated. The user would have no need to make changes on, or even to see, the table used to feed the chart.
'Many more positions' could raise another issue with my suggestion above—unless the specs have changed with version 3.
The maximum number of columns in a Numbers table is 256, so a table laid out with each Y value in a separate column would be limited to about 250 positions (allowing one column for the X values, one for the names and a few for other details, such as the two in your example).
Keeping all the x/y pairs in two columns would allow as many as 65,300 pairs to be listed on a single table, but (using Numbers v2) I don't see a way to label each point with a different name.
"I think its a bug from Numbers."
I very much doubt that is the case. A bug is something in the program that makes it operate in a manner different than the program is designed to do. An unimplemented feature or not-included feature is not a bug.
"Open Office can do it in my way, perhaps Excel too."
If Numbers were designed as a clone of OpenOffice or of MS Excel, then the facts stated would be relevant. But even a brief examination clearly indicates cloning either of these applications was not a design goal.
"But i have ti use Numbers."
If it's your choice, you may want to rethink it. If it's an imposed choice, you may need to explain to the person/organization making the choice it the performance limitations that the choice also imposes.
"How to get a ticket from support?"
The few times I've needed to contact Applecare, those contacts have been initially via telephone to the number listed in the Applecare agreement. As I recall, those occasions were in connection with hardware issue, and I received a case number during the initial call. Someone else may have more recent experience, or experience with a software issue, and be able to supply more useful information.
I would suggest filing a bug report (if you still consider this a bug), or a feature request. In Numbers, go to the Numbers menu and choose Provide Numbers Feedback. Apple will not likely contact you unless additional information regarding the issue is needed. Fixes, if needed, won't come before the next scheduled update; added features, if any, won't occur until the next full version upgrade.
Meantime, I'm hoping for a response from someone using Numbers 3.5.3 with a better solution, or a confirmation that they were unable to find one.
Regards,
Barry