Hi,
IF one PDF works and another does not that seems to be too small a sample to say one way or the other.
However generally speaking I would be looking towards a corrupt (even if that is a small corruption) of the PDF file.
Today we pulled out an old Tangerine iBook running Mac OS X 10.3 with only an Ethernet connection and used KidsPix in OS 9
We realised we would not be able to Airprint from there and had not shared the Printer on my OS X 10.12.2 iMac.
We also then found we could not connect to move the file to the G4 (Leopard) for some reason.
The first flash drive we tried was not formatted for that level of the OS.
The second would not store the files (even when converted to .jpg from .pict (QuickDraw) or to a .gif)
Eventually it showed up on the G4 and I was able to transfer it to the iMac without it appearing to be an executable file or saying it was corrupt.
The upshot of that is that it is not ways as straightforward as it seems.
Trying different methods from OX 10.3 to 10.5.8 to OS X 10.12.12 using plain File Transfer and Flash Drives formatted in and for different level of the Mac OS all had issues with an older file type that did not seem to be recognised by Preview when using some methods.
It also appeared that some of the transfer methods corrupted the file when saving/moving it to a particular Flash Drive.
Apple, other than the Hosts who monitor the Post for infringements on the rules, do not monitor these boards.
You can always use http://www.apple.com/feedback or target it down to a specific app or product if it helps.

8:21 pm Sunday; January 15, 2017
iMac 2.5Ghz i5 2011 (Sierra)
G4/1GhzDual MDD (Leopard 10.5.8)
MacBookPro 2Gb (Snow Leopard 10.6.8)
Mac OS X (10.6.8),
iPhone 6 iOS 10.x and an iPad (2)