Yes, 10.11.2 fixes the UPS USB issue. I'm also staring at corrupted TM backups. I like to prune my TM backups every so often. For example, deleting all backups of the /Applications directory and other large directories for which I only care about the most current set of data.
After updating to 10.11.2, I went through one of those exercises. Now, my backups for my Macbook (backed up to my iMac via OS X Server) are corrupted. Paging back in time reveals some blank dates (and this isn't a display refresh issue). I even had some things appear I deleted long ago. I'm going to have to wipe all those backups and do a new full backup. I won't trust that, for sure.
After doing the same on my iMac, the next backup should have backed-up the /Applications directory (15-20GB, I guess). Not this time. Treats it as if it has been backed-up already. I rebooted and started a new backup. Been sitting at 'Preparing...' for about two hours now. Not sure what the deal is with this. It's happened before and the solution was just leave it, it would finish eventually, and then everything worked fine after that.
I'm basically at the end of my rope with Apple. Software QA appears to be non-existent. Each new release breaks more things that used to work.