SIP is a very good idea, so I give credit to Apple for taking OS security very seriously, and not waiting until something major happens before doing anything about it.
MS has twiddled their thumbs over this software for years. Now they have to do something about it so it works as it should and not the user having to juggle things around to get it to work. We were fortunate it worked at all.
User VikingOSX actually kind of gave me the idea. He mentioned to someone else to try this little trick to get drivers installed for some expensive software that wouldn't work under El Capitan. And I thought, "Hey, I wonder if I can do that with IntelliType?"
I installed El Capitan over Yosemite today for no reason other than to get a Recovery partition on the drive, then restored Yosemite back to that partition. In the process, El Capitan is supposed to (from what I've read) leave such older drivers installed and working. Wrong. IntelliType was dead after the install was complete. So I would expect that in the future if a user reinstalls El Capitan over itself, or applies the full installer of an update, like 10.11.1 when we see that, it may break IntelliType again. Then you'll have to go through this whole thing again to get it working. Or (HA HA!), MS will finally update this software so it installs the way it's supposed to.