Hello again Arpitmalik1000,
My next suggestion would be for you to boot into Internet Recovery (as opposed to simply booting to the recovery partition on your internal drive) and see if this helps you to resolve the issue:
These steps reinstall the latest version of OS X that you previously had installed on your Mac. If you want to reinstall the version of OS X that came with your Mac, hold Command-Option-R at startup instead. This starts your Mac from Internet Recovery.
How to reinstall OS X on your Mac - Apple Support
https://support.apple.com/en-us/HT204904
If that does not resolve the issue, you may wish to make a backup of the information in your hard drive using Time Machine before you proceed further:
Use Time Machine to back up or restore your Mac - Apple Support
https://support.apple.com/en-us/HT201250
Once you have ensured the integrity of your backup of your personal data that you wish to save, you may need to erase and repartition your drive:
You can erase all volumes on a device and create new ones. For example, if you want to change the partition map of a USB, Thunderbolt, or other storage device from Master Boot Record to GUID Partition Map. If you simply want to erase a volume, see Erase a volume.
WARNING: Erasing and partitioning a device destroys all data on all volumes of the device.
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Select the device in the sidebar you want to erase and repartition, then click the Erase button .
Note: You can’t erase the device that contains your startup volume.
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Enter a name for the initial volume.
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Click the Map pop-up menu, then choose a format for the initial partition.
For MS-DOS and ExFAT partitions, the name must be eleven characters or less.
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GUID Partition Map: Used for all Intel-based Mac computers.
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Master Boot Record: Used for Windows partitions that will be formatted as MS-DOS (FAT) or ExFAT.
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Apple Partition Map: Used for compatibility with older PowerPC-based Mac computers.
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Click Erase, then click Done.
Disk Utility (El Capitan): Partition a physical disk
https://support.apple.com/kb/PH22240
Take care, and thanks for visiting the Apple Support Communities.