iOS 9 app backup with iTunes
OK, so it seems that "app thinning" in iOS 9 is causing some problems. When you backup your device with iTunes (backup on my mac), it no longer copies the apps, because the specific version (the "thinned" version) on your device may not work with other devices that you may have with that app loaded.
Which brings me to my problem. If I update apps from iTunes onto my mac, what version gets downloaded? Is it an "un-thinned" version, which means it can be "thinned" and loaded to each of my devices? or is it downloading various thinned versions for each device?
Given that I can't upload apps from my devices to my mac, can I even (still) download apps from my mac to my devices? How does thinning work in this case?
The real question is backup/restore of my devices. If I buy a new iPhone, and I want to restore my last backup to setup my new iPhone, I want the apps restored as well. I don't want to have to go back to iCloud and find all the apps and download them. How does this work with iTunes backups? or is Apple making iTunes backups obsolete too.
MacBook Pro with Retina display, OS X Yosemite (10.10.5)