Similar problem on 2 Macs, so not a hardware problem. When I move to El Capitan, I decided to completely recreate/resynch my mail. So deleted old one, and started resyncing. CPU consistently at 200+%, on both Macs.
- iMac i7 24Gb with Fusion drive
- MacBook i7 16Gb 1TB SSD
They started 'building' their mail around December 24th, and still going... I'm checking the size ('get info') of mail directories on both devices, and it's still growing. Size is about 24Gb, 380 000 items. (3 IMAP accounts, 1 iCloud, 1 gmail)
I hope that it's so heavy because it is still building (although this shouldn't take weeks on such a heavyweight machine...).
Outlook? No way - been there done that. Had so many issues that I moved away from Outlook for Mac.
Apple looking at this problem? I'm not naive... Mail has always been among their weakest points, and they're pretty deaf wrt user feedback. I'm pretty blunt, though a full blown Apple adept and shareholder, but unfortunately listening to their users for 'tactical' issues isn't amongst their better assets.
@Apple - pls prove me I'm wrong. Very willing to help give feedback to get this issue fixed.
Thanks