After Upgrade to El Capitan, Clicks on "Allow" or "Always Allow" on keychain dialogs don't register
After upgrading from Yosemite to El Capitan (10.11.1), I have noticed this issue when I'm trying to access a server where the login information has been saved in my keychain. The Finder brings up the keychain access dialog and when I click on "Allow" or "Always Allow" it doesn't register the click no matter how many times I click it. This is a serious problem because it prevents me from accessing my disks attached to my AirPort base station which critical files for me. If I click on "Deny" it accepts that and then I can reenter the login password. However, that is not how it should work.
I have notice the same issue when rebooting with my Mac FUSE drives.
I tried Keychain Access First Aid and when I had it verify my keychain, it complained about my ~/Library/Keychains/login.keychain not being accessible and asked me to open it manually. I tried that, but that didn't fix the problem.
Thank you very much.
MacBook Pro with Retina display, OS X El Capitan (10.11.1)