I Have been reading through the tread. And this has nothing to do with streaming movies but it has to do with Apple Music and YouTube. My ATV4 when first purchased showed my Apple Music and some of my YouTube videos in Dolby Surround. After I did the first update that went away. Can anyone verify this ?
Consider it verified. The explanation (or problem, depending on your point of view) is simple. The original TV4 tvOS v9.0 used a Dolby output connection with downstream devices to transfer non-Dolby audio in the "Dolby Surround" mode. This meant that your Apple Music and YouTube video 1.0 and/or 2.0 audio was actually sent as the active left and right channels on a "pseudo" 5.1 Dolby surround connection which, of course, triggered the receiving device Dolby decoder indicators. Active channels played correctly as long as the receiving device was capably of decoding a Dolby bitstream but many found this workflow to be very confusing. Switching to the TV4 "Stereo" mode would play these files in their normal "Stereo" PCM manner but most users found doing so to be inconvenient.
As a result, the TV4 "logic" was modified. Under tvOS v9.0.1 and v9.1, the source audio tracks are first evaluated to determine whether or not the audio is "multichannel" in nature. (I.e., for the purpose of this evaluation, it seems that any Dolby audio having an LFE channel is considered multichannel and any audio without an LFE channel is considered non-multichannel.) Once the "multichannel" status is known, the audio is then processed according to the "logic" of the particular Surround preference setting and tvOS release in use. Currently, under TV4 tvOS v9.1, non-multichannel audio is sent to the downstream device as "Stereo" PCM in both the "Auto" and "Dolby Surround" modes. Multichannel audio in the "Auto" mode is sent via a multichannel PCM connection with "active" channels carried on corresponding channels of the multichannel connection. (E.g., a 2.1 source Dolby audio track would only carry "active" audio on the left, right, and LFE channels of the multichannel PCM connection.) In the "Dolby Surround" mode, the same 2.1 Dolby source track would be sent to the downstream device as left, right, and LFE channels on a DD 5.1 connection.
Thus, your problem is solved but, as bodosom indicated, different problems can crop up for other users. For instance, under the current v9.1 logic, there is no such thing as Dolby "passthrough" of non-multichannel audio as under TV IOS v6.2.1 (TV2), TV IOS v7.2 (TV3), or tvOS v9.0/v9.0.1 (TV4) systems. Thus, under tvOS v9.1 DD 1.0 audio is sent as "Stereo" PCM which requires manual post-processing to restore playback through the center channel speaker. On the other hand, a DD 2.1 Dolby ProLogic II audio track is sent as a "pseudo" DD 5.1 connection which automatically disables decoding of the active matrix center and surround channels since the Dolby decoder is already operating in the multichannel mode. Am, therefore, requesting Apple engineers restore the previous "Dolby (Auto)" passthrough over HDMI option as a fourth TV4 mode option in addition to the current "Auto", "Dolby Surround", and "Stereo" options. (I.e., this option would unconditionally passthrough any Dolby bitstream for downstream decoding and send non-Dolby audio as "Stereo" PCM). Request anyone interested in restoring this workflow send feedback to Apple regarding the current lack of support for certain Dolby audio compression formats.