Quick and dirty back to back test
Set sound to Dolby Digital
Go to iTunes Movies, and watch "Preview" for Mission Impossible rogue nation. Audio will be Dolby Digital 5.1
Go to Trailers, and watch Mission Impossible rogue nation "trailer 2" (same trailer as above). Audio is output PCM.
What makes you assume the iTunes Store sever's 2:25 AC3 5.1 encoded trailer is the same file as the Apple Trailer's server 2:29 AAC 2.0 DD ProLogic II encoded trailer?
You appear to be operating under the misconception that any DD5.1 bitstream connection between the TV4 and your AVR in the "Dolby Surround" output mode must a) be sourced from a Dolby encoded audio track and must b) contain 6 channels of audio. This is not true. If the source track is AAC mono, then the TV4 will, in the "Dolby Surround" mode, open a DD5.1 connection with your receiver but, under tvOS v9.0.1, will only "impress" the source center channel mono audio on the center channel of the DD5.1 bitstream. Since all other channels are "empty," the AVR then plays only the center "active" channel through your speaker system and thus plays the audio as it was originally encoded on the source AAC audio track.
In a similar manner, an AAC 2.0, stereo, or DD PL II audio track content will be "impressed" on the same DD5.1 connection as L and R audio along with four "empty" audio channels and only play back through your receiver's left and right front speakers. Further, since the DD5.1 connection tells your AVR the bitstream actually contains six discrete audio channels (four of which are "empty"), most receivers disable DD Digital PL II post processing capabilities and you are stuck with 2, and only 2, active channels playing back.
On the other hand, if the source track was originally encoded as AC3 (1.0, 2.0, stereo, DD PL II, or DD5.1) then the source encoded AC3 bitstream is sent to your AVR for proper DD Digital decoding and playback. Such AC3 encoded bitstreams are the only ones that play back with AVR channel activity indicators properly lit. I.e., a mono AC3 audio track will display as a center channel DD Digital encode, and L/R AC3 audio track as an L/R DD Digital encode, and an AC3 5.1 audio track as a 5.1 DD Digital encode. Further, if your AVR has a combined "Auto Surround + DD PL II" playback mode, and DD PL II encoded content will automatically be sent through the DD PL II decoder for DD PL II post processing. Unfortunately, my AVR employs two separate controls for this and I have to manually activate any DD PL II post processing if desired.
Since most TV4 apps employ the built-in TV4 "Surround Sound" for output, most apps will demonstrate the same manner of playback dependent only on the actual "Surround Sound" mode selected by the user and the actual track encode used as the audio source for output. In addition, many (if not most) Apple and third-party TV4 apps are programmed to "hide" the true nature of the sourced audio track encode and/or not offer the user an opportunity to select between AAC and AC3 source audio tracks. That is why I recommend you use an TV4 app like "Computers" along with test videos containing both AAC and AC3 audio tracks to tabulate how the TV4 "Dolby Surround" setting outputs differently encoded audio tracks employing different forms of channelization. I can post some test clips containing various combinations of AAC and AC3 encoded tracks if needed for testing on your system.