archive mailbox in Mail with a mind of its own
Upgraded to the new El Capitan 10.11.2.
I've had problems with Mail ever since--I see I'm not the only one, but no one else describes the same problem as mine.
There is this new Archive Mailbox that is storing duplicates of EVERYTHING I get. Even after I've deleted messages, they reappear in Archive. Even when I have filter permissions set for messages to go into specific mailbox, they go there, AND the Archive box. I honestly just want to delete this box, but I see no option to do that or set its preferences anywhere.
When I first started Mail up after upgrading, I had lost all my preset mailboxes and had to re-add them. The permissions/rules were still there, but boxes gone. I lost a few hundred emails as well. I've been trying to rebuild my Mail back to what I had, but this Archive thing is really irritating me. I'm trying to simplify my time with email and this upgrade is making it more complicated.
Any advice?
TIA
Elaine
MacBook Pro, OS X El Capitan (10.11.1)