Faulty Quicktime export in Keynote 6 - embedded .m4a audio files get truncated
I have embedded .m4a audio files (which were recorded in Garageband) in a Keynote presentation. The audio files are just speech - they comprise my narration of the slide's contents. They play fully in Keynote, and in the slideshow whilst I am recording it. However, when the recorded slideshow is then exported to QT, the problem arises: In the QuickTime movie I have exported, some of the (usually longer) audio tracks are truncated, typically by only the last one, two or three words of the particular slide's narration (e.g. in a narration of just over a minute's duration). It looks like only the audio file's playback is truncated - the slide still advances in the QT movie at what I presume to be the right time; it's only the audio playback that prematurely stops.
File > Advanced > Change file type > Package Contents as elsewhere suggested doesn't solve it. Exporting to Powerpoint first, as elsewhere suggested, also doesn't fix it. I am running the latest versions - Keynote 6.6.1, El Capitan 10.11.1, and editing QT movies in QT Pro.
I also tried Format > Custom > Apple ProRes 422 and > Apple ProRes 4444 when exporting from Freehand to QT. (The only alternatives to H.264 that display on my system). This had no effect - the audio stopped at the same point as before in both cases.
I've also tried an off-canvas item in Keynote, both timed and manual appearance after the audio file should finish, and also an on-canvas invisible item, both timed and manual. In all cases, (working with an audio that has played in truncated style in my initial QT export) the audio in the exported QT video stops prematurely at the same spot, a few seconds before it should end. But listening to the audio in Keynote (by clicking on it), and in the record slideshow process, it plays fully. Most frustrating!
My Keynote files are stored on iCloud Drive, after discovering the mess that Google Drive makes of them.
Any suggestions? This bug is ruining many months of work. Any help would be most welcome!
iMac (27-inch, Late 2012), OS X El Capitan (10.11.1), Latest software used