Hello Archer36,
I want to give you an update about the thunderbolt ethernet adapter issue.
After thinking to have solved the issue installing the update for my 3rd party ethernet adapter that I menth it was responsible of the issue I started to experience another issue with all the ethernet connections.
Practically all my ethernet adapters: apple thunderbolt, apple USB and 3rd party USB, were working for a while after rebooting my MBA, but after a few time they stopped working (they were not showing anymore as connected to the system) and and the only way to use an ethernet cable was to reboot again and again every time it was needed. I assumed that my problem was the same observed by many other people having troubles with ethernet after waking up after sleeping and I tried to apply every kind of possible solution found on the WEB, but without success. During this wide research I noticed that there is a lot of people claiming about many and many problems they have experienced updating to el capitan and even to the latest 10.11.2...
Now I finally solved all the problems with my ethernet adapters disabling the SIP protection that has been added to el capitan in 10.11.2.
Basically I had to boot in "recovery mode" (holding CMD+R at boot), open the utility>terminal and run the command "csrutil disable" from there.
I know that SIP protects you by modifications to the system that has been found has vulnerability of OSX, but on the other side in this way I solved all my problems running that command... I will try to see if 10.11.3 will be able to run with SIP enabled (csrutil enable) and living all my ethernet adapter working without rebooting my MBA every time I need to connect using a cable instead of Wi-Fi.
So, I don't know if you have solved it's or not, it's just to let you know if you need it.
Regards