Apple Mail deletes messages
My laptop is running on El Capitan....all software is up to date. Apple Mail periodically deletes messages from my inbox, with no prompting from me. I can't find any setting to change this. Last night (17 December) it deleted messages from early October. I only have 65 messages total so it's not like that is the problem. How can I stop these messages being deleted? My sent box etc remains untouched.
MacBook Air, OS X El Capitan (10.11.2)