Hi @akaxlm
im having this exact same problem on a QNAP 12 Bay NAS running QTS 4.2
i started seeing this behavior after updating to QTS 4.2 from qts 4.1.3 (4.1.3 - No Probs)
looking through the documentation for QTS 4.1.x and 4.2, the version of AFP used by QNAP has changed, when i say AFP, what i really mean is Netatalk, Netatalk is what QNAP use for AFP connections. (open source version of Apple Filing Protocol - I dont know why they use it, possibly to do with Apple Licensing.)
see here - http://netatalk.sourceforge.net/
now i know that after 10.9.x , the way OS X handled AFP (netatalk) connections changed, this was around the same time as Apple changed the default file sharing protocol in OS X from AFP to SMB/CIFS.
historically other problems i have seen with QNAP and AFP connections have been to do with QNAP's implementation of Netatalk in there QTS software
QNAP usually take a couple of .point releases of qts to update the version of netatalk they are using to be more compatible with the current Verson of OS X
i also wonder how much of this has to do with the SMB 3.0 implementation that QNAP uses.
im still investigating this and looking for a fix. if i find one ill let you know..
HTH
Natas