Hi chintan74,
I understand you have two iPhones with different telephone numbers but the same Apple ID. Has the call history always appeared on both iPhones or is this a recent issue? One thing that may affect this is your FaceTime settings. On both of your iPhones, try removing your email addresses from the "You can be reached by Facetime At" section. If this does not resolve the issue, try removing FaceTime from the cellular data settings or turning FaceTime off.
Add or remove your phone number to iMessage or FaceTime on your Mac, iPad, and iPod touch
See the section entitled Add or remove your phone number on your iPad or iPod touch for information about the FaceTime settings.
Get help if you can‘t make or receive FaceTime calls
Settings > Cellular > Use Cellular Data For, and turn off FaceTime.
Take care,