More information from the logs, in case it can be of any help:
Jun 3 10:09:33 Nyx kernel[0]: AppleCamIn::systemWakeCall - messageType = 0xE0000320
Jun 3 10:09:33 Nyx kernel[0]: AppleCamIn::systemWakeCall - messageType = 0xE0000340
Jun 3 10:09:33 Nyx kernel[0]: AppleCamIn::wakeEventHandlerThread
Jun 3 10:09:33 Nyx syslogd[40]: ASL Sender Statistics
Jun 3 10:09:33 Nyx kernel[0]: Previous sleep cause: 5
Jun 3 10:09:33 Nyx kernel[0]: AppleIntelLpssSpiController1::_reset: fDmacService is NULL
Jun 3 10:09:33 Nyx kernel[0]: ARPT: 146859.677883: wl0: leaveModulePoweredForOffloads: Wi-Fi will turn off.
Jun 3 10:09:33 Nyx kernel[0]: ARPT: 146859.677897: AirPort_Brcm43xx::syncPowerState: WWEN[disabled]
Jun 3 10:09:33 Nyx CommCenter[218]: Telling CSI to exit low power.
Jun 3 10:09:33 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
[...]
Jun 3 10:09:33 Nyx kernel[0]: AppleCamIn::systemWakeCall - messageType = 0xE0000340
Jun 3 10:09:33 Nyx kernel[0]: AppleCamIn::wakeEventHandlerThread
Jun 3 10:09:33 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:35 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:35 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:35 Nyx airportd[56]: __setPowerWithRetry: Retry setting power to OFF, err = -3903 (Operation not supported). Remaining:3.
Jun 3 10:09:35 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:36 Nyx airportd[56]: __setPowerWithRetry: Retry setting power to OFF, err = -3903 (Operation not supported). Remaining:2.
Jun 3 10:09:36 Nyx airportd[56]: __setPowerWithRetry: Retry setting power to OFF, err = -3903 (Operation not supported). Remaining:1.
Jun 3 10:09:36 Nyx airportd[56]: airportdProcessDLILEvent: <en0> FAILED to set power OFF, err = -3903 (Operation not supported)
Jun 3 10:09:37 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 0, transactionType 64, frameNumber 0
Jun 3 10:09:37 Nyx kernel[0]: [HID] [ATC] [Error] AppleDeviceManagementHIDEventService::getCriticalError Could not get critical error (reportID = 0xe0, Return Value = 0xe00002ed)
Jun 3 10:09:37 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:38 Nyx kernel[0]: AppleCamIn::handleWakeEvent_gated
Jun 3 10:09:39 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:39 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:39 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:39 Nyx kernel[0]: [HID] [ATC] [Error] AppleMultitouchInputHIDEventDriver::unleashDeviceGated Failed to get device leash state. Error = 0xe00002ed
Jun 3 10:09:39 Nyx kernel[0]: ARPT: 146866.447003: ChangeVCO => vco:960, xtalF:40, frac: 98, ndivMode: 3, ndivint: 24
Jun 3 10:09:39 Nyx kernel[0]: ARPT: 146866.447017: Data written into the PLL_CNTRL_ADDR2: 00000c31
Jun 3 10:09:39 Nyx kernel[0]: ARPT: 146866.447064: Data written into the PLL_CNTRL_ADDR3 (Fractional): 0000100e
Jun 3 10:09:39 Nyx kernel[0]: ARPT: 146866.461460: AirPort_Brcm43xx::syncPowerState: WWEN[disabled]
Jun 3 10:09:41 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 0, transactionType 64, frameNumber 0
Jun 3 10:09:41 Nyx kernel[0]: [HID] [ATC] [Error] AppleDeviceManagementHIDEventService::getWakeReason Could not get wake reason (reportID = 0xc5, Return Value = 0xe00002ed)
Jun 3 10:09:41 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:43 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:43 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:43 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:45 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:45 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:45 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:47 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:47 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:47 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device
Jun 3 10:09:49 Nyx kernel[0]: AppleHSSPIController::_enqueueSPICommandGated SPICommand timed out. Interface 3, transactionType 64, frameNumber 0
Jun 3 10:09:49 Nyx kernel[0]: AppleActuatorDevice::_setHostClickControl() Failed to set host click control. Error = 0xe00002ed
Jun 3 10:09:49 Nyx kernel[0]: Error: AppleHSSPIController::doSPITransfer ERR received from device