for the
Points.
Hi,
You have said this is solved but your Post does not seem to say that.
As Eric says it is most likely something in your Preferences that is not working properly
Eric has said how to access the main Preferences Folder.
The OS (and the apps that run on the OS) would, in the past, have put info directly in to the .plists.
Nowadays as the OS and some of the Apple Apps are protected from bring the computer to a grinding halt (Sandboxing) there is now a much longer Read and Write route to get into into the file.
In the case of Messages it is ~/Library/Containers/com.apple.iChat/Data/Library/Preferences
In this folder are many Aliases pointing to the the original Files in ~/Library/Preferences (The name of the Path Eric was talking about).
You can loose Permissions or even sometime Ownership of the odd file in the Preferences.
However you also have to have Read and Write Permissions (which includes Ownership) of the folders things are in as well.
In the case of ~/Library/Preferences it is only three folder (The Little House icon one), the Library and the Preferences.
In the case of ~/Library/Containers/com.apple.iChat/Data/Library/Preferences it is many more.
There is a way to check an individual file.
Highlight the item and Right Click
Select "Get Info".
In the Info panel scroll to the bottom.
Your ShortName should appear (The Little House Icon name)
It should have Read and Write Permissions.
Highlight this Line
Unpadlock the Info Panel
Use the Cogwheel type icon under the list
There should be a Phrase that read "Make yourShortName (Me) the Owner" and it should be greyed out (As in already done and you Own it)

In a manual check you then have to check all the folders as well and it becomes a very long winded task.
In this Thread Lin Dais has two important posts
Reset Home Folder permissions and ACLs Error
The Orange Helpful Star marked one has the test instructions to use in Terminal to find out how many files and Folders ado not have the right Permissions.
The Solved Green ticked marked one has the Instructions to correct these.
The Test one can take quite a long time if your Photo Library is quite large and if you have lots of Documents and generally lots of files and Folders to check.
It is important to try that first so that you know how long the Solved one is likely to take.

7:42 pm Sunday; September 11, 2016
iMac 2.5Ghz i5 2011 (El Capitan)
G4/1GhzDual MDD (Leopard 10.5.8)
MacBookPro 2Gb (Snow Leopard 10.6.8)
Mac OS X (10.6.8),
iPhone and an iPad (2)