Studio Brand wrote:
I use left bottom active corner for switching between windows of program. In macOS Sierra after switching OS activates other program and I need to press alt+tab for switch in the necessary program. El Capitan had no this mistake.
I am not sure I understand completely.
You have "Application Windows" for the bottom left corner:

Suppose, for example, that you have Mail as the active application and move the cursor to the hot corner.
This should open Mission Control with only the windows Mail. Right?
Are you saying that when you click on one of those windows, another program comes to the front, instead of Mail?
If this is the problem, all I can say is that I can't reproduce it, on either my two macs (both running Sierra).
So I assume this is caused by some software conflict, but is not a universal bug in Sierra.
Try creating a new user account and experiment. Do you see the same problem? (I strongly suspect the answer to be "no").
Next, try restarting in Safe Mode. I am not sure if Mission Control even works in Safe Mode; if it does, test.
In any case, restart normally again and retry. Chances are the cleanup that is done when booting in Safe Mode may have sorted this out.
Let us know.