I do not have a Wacom tablet and restarting in Safe mode did not fix the issue.
Here is the Etrecheck report:
EtreCheck version: 3.0.6 (315)
Report generated 2016-10-19 08:32:16
Download EtreCheck from https://etrecheck.com
Runtime 3:37
Performance: Good
Click the [Support] links for help with non-Apple products.
Click the [Details] links for more information about that line.
Problem: Other problem
Description:
Organic MBPr Keyboard not working properly after OS Sierra update
Hardware Information: ⓘ
MacBook Pro (Retina, 13-inch, Early 2013)
[Technical Specifications] - [User Guide] - [Warranty & Service]
MacBook Pro - model: MacBookPro10,2
1 2.6 GHz Intel Core i5 CPU: 2-core
8 GB RAM Not upgradeable
BANK 0/DIMM0
4 GB DDR3 1600 MHz ok
BANK 1/DIMM0
4 GB DDR3 1600 MHz ok
Bluetooth: Good - Handoff/Airdrop2 supported
Wireless: en0: 802.11 a/b/g/n
Battery: Health = Normal - Cycle count = 1032
Video Information: ⓘ
Intel HD Graphics 4000
Color LCD 2560 x 1600
System Software: ⓘ
macOS Sierra 10.12 (16A323) - Time since boot: less than an hour
Disk Information: ⓘ
APPLE SSD SM256E disk0 : (251 GB) (Solid State - TRIM: Yes)
EFI (disk0s1) <not mounted> : 210 MB
Recovery HD (disk0s3) <not mounted> [Recovery]: 650 MB
Macintosh HD (disk1) / [Startup]: 249.80 GB (75.69 GB free)
Encrypted AES-XTS Unlocked
Core Storage: disk0s2 250.14 GB Online
USB Information: ⓘ
Apple Inc. FaceTime HD Camera (Built-in)
Apple Inc. Apple Internal Keyboard / Trackpad
Apple Inc. BRCM20702 Hub
Apple Inc. Bluetooth USB Host Controller
Logitech USB Receiver
Thunderbolt Information: ⓘ
Apple Inc. thunderbolt_bus
Gatekeeper: ⓘ
Mac App Store and identified developers
Kernel Extensions: ⓘ
/Applications/Tunnelblick.app
[not loaded] net.tunnelblick.tap (20141104 (Tunnelblick build 4582) - 2016-08-30) [Support]
[not loaded] net.tunnelblick.tun (20141104 (Tunnelblick build 4582) - 2016-08-30) [Support]
/Applications/eqMac.app
[loaded] com.bitgapp.eqMacDriver (1.5.2 - SDK 10.10 - 2015-09-02) [Support]
/Applications/iSkysoft iTube Studio.app
[not loaded] com.Perfect.Driver.SystemAudioRecorder (1.1.0 - SDK 10.6 - 2016-10-13) [Support]
/Library/Extensions
[loaded] com.avira.kext.FileAccessControl (1.2.2 - SDK 10.9 - 2016-10-04) [Support]
/System/Library/Extensions
[not loaded] com.aliph.driver.jstub (1.1.2 - SDK 10.7 - 2016-10-06) [Support]
Startup Items: ⓘ
ProTec6b: Path: /Library/StartupItems/ProTec6b
Startup items no longer function in OS X Yosemite or later
System Launch Agents: ⓘ
[not loaded] 7 Apple tasks
[loaded] 166 Apple tasks
[running] 98 Apple tasks
System Launch Daemons: ⓘ
[not loaded] 39 Apple tasks
[loaded] 157 Apple tasks
[running] 107 Apple tasks
Launch Agents: ⓘ
[not loaded] com.adobe.AAM.Updater-1.0.plist (2015-05-07) [Support]
[failed] com.adobe.ARMDCHelper.cc24aef4a1b90ed56a725c38014c95072f92651fb65e1bf9c8e43c37a2 3d420d.plist (2016-10-11) [Support]
[loaded] com.avira.antivirus.general.agent.plist (2016-01-21) [Support]
[loaded] com.avira.antivirus.gjallarhorn.plist (2016-10-04) [Support]
[loaded] com.avira.antivirus.notifications.agent.plist (2016-01-21) [Support]
[loaded] com.avira.antivirus.odscan.default.plist (2016-10-17) [Support]
[loaded] com.avira.antivirus.scheduler.agent.plist (2016-01-21) [Support]
[running] com.avira.antivirus.systray.plist (2016-01-21) [Support]
[loaded] com.avira.antivirus.telemetry.agent.plist (2016-01-21) [Support]
[loaded] com.avira.antivirus.update.default.plist (2016-01-21) [Support]
[running] com.avira.helper.avstats.plist (2016-01-21) [Support]
[loaded] com.google.keystone.agent.plist (2016-07-12) [Support]
[loaded] com.oracle.java.Java-Updater.plist (2013-08-14) [Support]
[not loaded] com.teamviewer.teamviewer.plist (2016-08-22) [Support]
[not loaded] com.teamviewer.teamviewer_desktop.plist (2016-08-22) [Support]
[loaded] org.gpgtools.Libmacgpg.xpc.plist (2016-06-28) [Support]
[loaded] org.gpgtools.gpgmail.enable-bundles.plist (2015-03-08) [Support]
[loaded] org.gpgtools.gpgmail.patch-uuid-user.plist (2015-03-08) [Support]
[loaded] org.gpgtools.macgpg2.fix.plist (2015-03-08) [Support]
[running] org.gpgtools.macgpg2.shutdown-gpg-agent.plist (2015-03-08) [Support]
[loaded] org.gpgtools.updater.plist (2016-08-08) [Support]
Launch Daemons: ⓘ
[loaded] com.adobe.ARMDC.Communicator.plist (2016-10-11) [Support]
[loaded] com.adobe.ARMDC.SMJobBlessHelper.plist (2016-10-11) [Support]
[loaded] com.adobe.fpsaud.plist (2016-05-09) [Support]
[failed] com.avira.antivirus.dbcleaner.plist (2016-01-21) [Support]
[running] com.avira.helper.watchdox.plist (2016-01-21) [Support]
[loaded] com.github.IngmarStein.Monolingual.Helper.plist (2015-11-03) [Support]
[loaded] com.google.keystone.daemon.plist (2016-09-03) [Support]
[loaded] com.malwarebytes.HelperTool.plist (2016-06-23) [Support]
[loaded] com.microsoft.autoupdate.helpertool.plist (2016-08-03) [Support]
[loaded] com.microsoft.office.licensing.helper.plist (2012-04-02) [Support]
[loaded] com.microsoft.office.licensingV2.helper.plist (2015-12-06) [Support]
[loaded] com.oracle.java.Helper-Tool.plist (2013-08-14) [Support]
[loaded] com.teamviewer.Helper.plist (2016-08-22) [Support]
[not loaded] com.teamviewer.teamviewer_service.plist (2016-08-22) [Support]
[loaded] net.tunnelblick.tunnelblick.tunnelblickd.plist (2016-08-31) [Support]
[loaded] org.gpgtools.gpgmail.patch-uuid.plist (2015-03-08) [Support]
[loaded] org.wireshark.ChmodBPF.plist (2015-01-12) [Support]
User Launch Agents: ⓘ
[loaded] com.bittorrent.uTorrent.plist (2015-05-07)
[loaded] com.citrixonline.GoToMeeting.G2MUpdate.plist (2016-08-15) [Support]
[running] com.lastpass.LastPassHelper.plist (2016-01-05) [Support]
[running] com.spotify.webhelper.plist (2016-10-16) [Support]
[loaded] net.tunnelblick.tunnelblick.LaunchAtLogin.plist (2016-08-25) [Support]
User Login Items: ⓘ
iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
Mail Application (/Applications/Mail.app)
Sync Application (/Applications/Sync.app)
Dropbox Application (/Applications/Dropbox.app)
iSkysoft Helper Compact Application (~/Library/Application Support/Helper/iSkysoft Helper Compact.app)
Degoo Application Hidden (/Applications/Degoo/Degoo.app)
Google Chrome Application Hidden (/Applications/Google Chrome.app)
Internet Plug-ins: ⓘ
FlashPlayer-10.6: 21.0.0.242 - SDK 10.6 (2016-05-16) [Support]
QuickTime Plugin: 7.7.3 (2016-09-13)
AdobePDFViewerNPAPI: 15.017.20050 - SDK 10.11 (2016-07-15) [Support]
AdobePDFViewer: 15.017.20050 - SDK 10.11 (2016-07-15) [Support]
Flash Player: 21.0.0.242 - SDK 10.6 (2016-05-16) Outdated! Update
SharePointBrowserPlugin: 14.3.9 - SDK 10.6 (2015-11-03) [Support]
Google Earth Web Plug-in: 7.1 (2016-10-17) [Support]
nplastpass: 3.1.89 - SDK 10.10 (2015-11-03) [Support]
Silverlight: 5.1.40416.0 - SDK 10.6 (2015-11-03) [Support]
JavaAppletPlugin: Java 8 Update 91 build 14 (2016-04-27) Check version
User internet Plug-ins: ⓘ
CitrixOnlineWebDeploymentPlugin: 1.0.105 (2013-04-25) [Support]
VSeeHelper: Unknown
WebEx64: 1.0 - SDK 10.6 (2015-11-06) [Support]
Safari Extensions: ⓘ
AdBlock - BetaFish, Inc. - https://getadblock.com (2016-05-21)
Grammarly Spell Checker & Grammar Checker - Grammarly (2016-02-15)
iTube Studio - iSkysoft Studio - http://www.iskysoft.com (2016-06-27)
Clean Links for Google - Dennis Umetzu - http://www.umetzu.com (2016-04-19)
LastPass - LastPass - https://lastpass.com (2016-08-25)
Ghostery - GHOSTERY, Inc. - https://www.ghostery.com/ (2016-03-13)
3rd Party Preference Panes: ⓘ
Flash Player (2016-05-09) [Support]
GPGPreferences (2016-10-13) [Support]
Java (2016-04-27) [Support]
Time Machine: ⓘ
Skip System Files: NO
Auto backup: YES
Volumes being backed up:
Macintosh HD: Disk size: 249.80 GB Disk used: 174.12 GB
Destinations:
Backup HD [Local]
Total size: 999.86 GB
Total number of backups: 23
Oldest backup: 9/1/15, 1:21 PM
Last backup: 10/1/16, 1:44 PM
Size of backup disk: Excellent
Backup size 999.86 GB > (Disk size 249.80 GB X 3)
Top Processes by CPU: ⓘ
52% savapi
21% corecaptured
18% bird
7% kernel_task
4% WindowServer
Top Processes by Memory: ⓘ
868 MB Google Chrome Helper(8)
810 MB kernel_task
475 MB savapi
279 MB avguard.bin
221 MB com.apple.WebKit.WebContent(3)
Virtual Memory Information: ⓘ
405 MB Free RAM
7.60 GB Used RAM (2.19 GB Cached)
0 B Swap Used
Diagnostics Information: ⓘ
Oct 19, 2016, 08:27:08 AM /Library/Logs/DiagnosticReports/suggestd_2016-10-19-082708_[redacted].cpu_resou rce.diag [Details]
suggestd
Oct 19, 2016, 08:23:25 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-082325_[redacted].crash
/Applications/Avira.app/Contents/MacOS/avlogwriter
Oct 19, 2016, 08:23:23 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-082323_[redacted].crash
Oct 19, 2016, 08:23:06 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-082306_[redacted].crash
Oct 19, 2016, 08:22:26 AM Self test - passed
Oct 19, 2016, 07:18:25 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-071825_[redacted].crash
Oct 19, 2016, 07:01:07 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-070107_[redacted].crash
Oct 19, 2016, 07:01:03 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-070103_[redacted].crash
Oct 19, 2016, 07:00:48 AM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-19-070048_[redacted].crash
Oct 18, 2016, 09:16:33 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-211633_[redacted].crash
Oct 18, 2016, 09:16:22 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-211622_[redacted].crash
Oct 18, 2016, 09:16:12 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-211612_[redacted].crash
Oct 18, 2016, 09:16:02 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-211602_[redacted].crash
Oct 18, 2016, 08:46:00 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-204600_[redacted].crash
Oct 18, 2016, 08:45:41 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-204541_[redacted].crash
Oct 18, 2016, 08:45:29 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-204529_[redacted].crash
Oct 18, 2016, 08:45:18 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-204518_[redacted].crash
Oct 18, 2016, 03:42:31 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-154231_[redacted].crash
Oct 18, 2016, 03:42:17 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-154217_[redacted].crash
Oct 18, 2016, 03:42:07 PM /Library/Logs/DiagnosticReports/avlogwriter_2016-10-18-154207_[redacted].crash
Oct 18, 2016, 02:13:10 PM /Library/Logs/DiagnosticReports/com.apple.WebKit.Databases_2016-10-18-141310_[r edacted].cpu_resource.diag [Details]
/System/Library/Frameworks/WebKit.framework/Versions/A/XPCServices/com.apple.We bKit.Databases.xpc/Contents/MacOS/com.apple.WebKit.Databases
Oct 18, 2016, 01:14:43 PM /Library/Logs/DiagnosticReports/iPhoto_2016-10-18-131443_[redacted].cpu_resourc e.diag [Details]
/Applications/iPhoto.app/Contents/MacOS/iPhoto
Oct 18, 2016, 12:34:15 PM /Library/Logs/DiagnosticReports/com.apple.WebKit.Databases_2016-10-18-123415_[r edacted].cpu_resource.diag [Details]
Oct 18, 2016, 07:15:35 AM /Library/Logs/DiagnosticReports/com.apple.WebKit.Databases_2016-10-18-071535_[r edacted].cpu_resource.diag [Details]
Oct 17, 2016, 09:06:24 PM /Library/Logs/DiagnosticReports/FaceTime_2016-10-17-210624_[redacted].hang
/Applications/FaceTime.app/Contents/MacOS/FaceTime
Oct 17, 2016, 12:36:56 PM /Library/Logs/DiagnosticReports/com.apple.WebKit.Databases_2016-10-17-123656_[r edacted].cpu_resource.diag [Details]
Oct 17, 2016, 07:57:13 AM /Library/Logs/DiagnosticReports/com.apple.WebKit.Databases_2016-10-17-075713_[r edacted].cpu_resource.diag [Details]