I booted into the Safe Mode, and used DetectX to find some of the remaining flies of MacKeeper. two of them appeared to be log files and one file had a name made of random letter (similar to a serial number).
The files were removed. Then I booted back normally.
during the time I was in Safe Mode, I didnt feel any of the issues. But after I am back on a normal boot, I see the issue again.
The problem is that, these issues happen 80% of the time, so if they dont appear, it doesn't means they're gone. So during the Safe Mode boot, either it was removed cause of the safe mode, or I was lucky not to face the issue at "that time". Cant say for sure.
In short, I still have the issue.
Extra: Here is the log from the EtreCheck:-
EtreCheck version: 3.0.6 (315)
Report generated 2016-10-22 00:41:45
Download EtreCheck from https://etrecheck.com
Runtime 1:31
Performance: Excellent
Click the [Support] links for help with non-Apple products.
Click the [Details] links for more information about that line.
Problem: Other problem
Description:
The browser is not working properly. The pages are not loading and the scripted buttons are not clickable (including Youtube buttons, images from Google Image Search, and HTML Radio Buttons)
Hardware Information:ⓘ
MacBook Pro (Retina, 15-inch, Late 2013)
[Technical Specifications] - [User Guide] - [Warranty & Service]
MacBook Pro - model: MacBookPro11,3
1 2.3 GHz Intel Core i7 CPU: 4-core
16 GB RAM Not upgradeable
BANK 0/DIMM0
8 GB DDR3 1600 MHz ok
BANK 1/DIMM0
8 GB DDR3 1600 MHz ok
Bluetooth: Good - Handoff/Airdrop2 supported
Wireless: en0: 802.11 a/b/g/n/ac
Battery: Health = Normal - Cycle count = 311
Video Information:ⓘ
Intel Iris Pro
Color LCD 2880 x 1800
NVIDIA GeForce GT 750M - VRAM: 2048 MB
System Software:ⓘ
OS X El Capitan 10.11.3 (15D21) - Time since boot: less than an hour
Disk Information:ⓘ
APPLE SSD SM0512F disk0 : (500.28 GB) (Solid State - TRIM: Yes)
EFI (disk0s1) <not mounted> : 210 MB
Macintosh HD (disk0s2) / [Startup]: 429.42 GB (36.86 GB free)
Recovery HD (disk0s3) <not mounted> [Recovery]: 650 MB
WINDOWS (disk0s4) /Volumes/WINDOWS : 70.00 GB (6.18 GB free)
USB Information:ⓘ
Apple Inc. Apple Internal Keyboard / Trackpad
Apple Inc. BRCM20702 Hub
Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information:ⓘ
Apple Inc. thunderbolt_bus
Gatekeeper:ⓘ
Mac App Store and identified developers
Unknown Files:ⓘ
/Library/LaunchDaemons/com.apple.ightem.plist
/Library/LaunchDaemons/com.representationist.service.plist
/etc/run_app.sh
2 unknown files found. [Check files]
Kernel Extensions:ⓘ
/Applications/ExpressVPN.app
[not loaded] expressvpn.tap (20150118 - 2016-09-21) [Support]
[loaded] expressvpn.tun (20150118 - 2016-09-21) [Support]
/Library/Application Support/VirtualBox
[loaded] org.virtualbox.kext.VBoxDrv (5.0.6 - 2015-10-15) [Support]
[loaded] org.virtualbox.kext.VBoxNetAdp (5.0.6 - 2015-10-15) [Support]
[loaded] org.virtualbox.kext.VBoxNetFlt (5.0.6 - 2015-10-15) [Support]
[loaded] org.virtualbox.kext.VBoxUSB (5.0.6 - 2015-10-15) [Support]
Startup Items:ⓘ
TuxeraNTFSUnmountHelper: Path: /Library/StartupItems/TuxeraNTFSUnmountHelper
Startup items no longer function in OS X Yosemite or later
System Launch Agents:ⓘ
[not loaded] 6 Apple tasks
[loaded] 153 Apple tasks
[running] 77 Apple tasks
System Launch Daemons:ⓘ
[not loaded] 46 Apple tasks
[loaded] 158 Apple tasks
[running] 84 Apple tasks
Launch Agents:ⓘ
[not loaded] com.adobe.AAM.Updater-1.0.plist (2016-06-20) [Support]
[loaded] com.oracle.java.Java-Updater.plist (2015-07-03) [Support]
[not loaded] com.teamviewer.teamviewer.plist (2016-09-10) [Support]
[not loaded] com.teamviewer.teamviewer_desktop.plist (2016-09-10) [Support]
[failed] com.tidalpoolsoftware.macproxy.application.plist (2011-05-16) [Support]
Launch Daemons:ⓘ
[loaded] com.adobe.SwitchBoard.plist (2015-02-13) [Support]
[loaded] com.adobe.fpsaud.plist (2016-01-29) [Support]
[not loaded] com.apple.ightem.plist (2016-10-21) [Support]
[loaded] com.expressvpn.tap.plist (2016-09-21)
[loaded] com.expressvpn.tun.plist (2016-09-21)
[loaded] com.malwarebytes.HelperTool.plist (2016-10-21) [Support]
[loaded] com.oracle.java.Helper-Tool.plist (2015-07-03) [Support]
[running] com.representationist.service.plist (2016-10-21) [Support]
[loaded] com.teamviewer.Helper.plist (2015-03-02) [Support]
[not loaded] com.teamviewer.teamviewer_service.plist (2016-09-10) [Support]
[failed] com.tidalpoolsoftware.macproxy.kext.plist (2011-03-24)
[not loaded] org.virtualbox.startup.plist (2015-10-15) [Support]
User Launch Agents:ⓘ
[loaded] com.bittorrent.uTorrent.plist (2015-05-15)
[loaded] com.google.keystone.agent.plist (2016-07-12) [Support]
[not loaded] org.virtualbox.vboxwebsrv.plist (2015-10-15) [Support]
User Login Items:ⓘ
iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
Android File Transfer Agent Application (~/Library/Application Support/Google/Android File Transfer/Android File Transfer Agent.app)
Dropbox Application (/Applications/Dropbox.app)
Internet Plug-ins:ⓘ
AdobeAAMDetect: AdobeAAMDetect 1.0.0.0 - SDK 10.6 (2016-06-20) [Support]
WebClient: 1.0 - SDK 10.2 (2015-08-14) [Support]
FlashPlayer-10.6: 20.0.0.306 - SDK 10.6 (2016-02-22) [Support]
QuickTime Plugin: 7.7.3 (2016-01-14)
Flash Player: 20.0.0.306 - SDK 10.6 (2016-02-22) Outdated! Update
Default Browser: 601 - SDK 10.11 (2016-01-14)
JavaAppletPlugin: Java 8 Update 45 (2015-07-03) Check version
User internet Plug-ins:ⓘ
BlueStacks Install Detector: Unknown
3rd Party Preference Panes:ⓘ
Flash Player (2016-01-29) [Support]
Java (2015-04-10) [Support]
Tuxera NTFS (2016-01-28) [Support]
Bad Fonts:ⓘ
49.TTF: ~/Library/Fonts/49.TTF
Penkufsh.ttf: ~/Library/Fonts/Penkufsh.ttf
HOTHAM.TTF: ~/Library/Fonts/HOTHAM.TTF
2.TTF: ~/Library/Fonts/2.TTF
ARF Mosques.ttf: ~/Library/Fonts/ARF Mosques.ttf
Zokrofi.ttf: ~/Library/Fonts/Zokrofi.ttf
AL-Bsher Outline.ttf: ~/Library/Fonts/AL-Bsher Outline.ttf
Quran1.ttf: ~/Library/Fonts/Quran1.ttf
Bader.ttf: ~/Library/Fonts/Bader.ttf
MOTHNNA.TTF: ~/Library/Fonts/MOTHNNA.TTF
Mateenou.ttf: ~/Library/Fonts/Mateenou.ttf
HADITH2.TTF: ~/Library/Fonts/HADITH2.TTF
Time Machine:ⓘ
Time Machine not configured!
Top Processes by CPU:ⓘ
5% WindowServer
1% kernel_task
1% Google Chrome Helper(5)
1% System Events
0% fontd
Top Processes by Memory:ⓘ
1.07 GB Google Chrome Helper(5)
892 MB kernel_task
213 MB WindowServer
180 MB Google Chrome
164 MB mdworker(9)
Virtual Memory Information:ⓘ
9.60 GB Free RAM
6.39 GB Used RAM (2.10 GB Cached)
0 B Swap Used
Diagnostics Information:ⓘ
Oct 22, 2016, 12:27:21 AM Self test - passed
Oct 21, 2016, 10:01:53 PM /Library/Logs/DiagnosticReports/Safari_2016-10-21-220153_[redacted].cpu_resourc e.diag [Details]
/Applications/Safari.app/Contents/MacOS/Safari
Oct 21, 2016, 02:48:44 PM ~/Library/Logs/DiagnosticReports/SpotlightNetHelper_2016-10-21-144844_[redacted ].crash
/System/Library/PrivateFrameworks/ParsecUI.framework/Versions/A/Support/Spotlig htNetHelper.app/Contents/MacOS/SpotlightNetHelper
Oct 21, 2016, 02:45:55 PM ~/Library/Logs/DiagnosticReports/SpotlightNetHelper_2016-10-21-144555_[redacted ].crash
Oct 19, 2016, 10:08:22 AM ~/Library/Logs/DiagnosticReports/SystemUIServer_2016-10-19-100822_[redacted].cr ash
com.apple.systemuiserver - /System/Library/CoreServices/SystemUIServer.app/Contents/MacOS/SystemUIServer
Oct 19, 2016, 10:08:20 AM ~/Library/Logs/DiagnosticReports/SystemUIServer_2016-10-19-100820_[redacted].cr ash
Oct 19, 2016, 10:08:03 AM ~/Library/Logs/DiagnosticReports/SystemUIServer_2016-10-19-100803_[redacted].cr ash