Hi spacebus,
Thanks for the screenshot, but I am having trouble understanding the abbreviations and how they relate to your overall aim.
Here is a simplified document, using the Filter feature in Numbers. Avoid merged cells!
Identify those rows that you want to appear in the charts (graphs) by a formula in another column (G in this example).

Formula in G2 of the Master Table (and Fill Down)
=IF(AND(B2=Choose::B$1,C2=Choose::B$2),"Show","Hide")
Select the columns that you want as X and Y axes for each chart (graph) and insert those graphs.
Now apply a Filter to the Master Table

You can hide the column (G) that controls the Filter.
Thanks, Barry for the hint on how to include/exclude Hidden Data in a graph 🙂.
Regards,
Ian.