You are right to be concerned but you should be clear on what the issues seem to be. Apple added APFS to High Sierra, very welcome but immature in OS X, but the company has lots of positive experience with APFS in iOS. Apple itself suggests keeping HFS+ on spinning platters and formatting APFS only on flash, and in fact, converts HFS+ to APFS when you download HS bits from the Apple store. HS can see many external devices using USB 3.0 and can boot images from some of them, but not all of them. Case in point: I do a nightly cloned backup with Carbon Copy Cloner (a bit-for-bit copy of my internal drive) to two external USB 3.0 enclosures, an OWC/macsales On-The-Go and a NewerTech RAID 1, both of which have been in use for >5 years with zero problems, both bootable prior to High Sierra but now only the RAID device is bootable. The On-The-Go still makes perfect cloned copies but to boot any device in it when a clone was made, the drive must be installed inside the machine. The RAID cannot be managed in that manner, but fortunately, it is bootable with HS. I clone an SSD running APFS to disks in the On-The-Go and the RAID appliance both formatted HFS+. Files are interchangeable and if I put the disk inside the On-The-Go inside the machine, it boots and runs apps as well as the SSD, but of course, slower. It takes me 21 minutes to swap drives, which is a pain when, if the OS was working correctly, isn't as convenient as holding down the option key. But, I am protected from catastrophic disk failure of the drive inside the machine. All disks eventually fail so a clone makes it possible to almost instantly recover. Why one works and not the other, since both are USB 3.0 compliant and both have worked for years? Different chipsets and firmware and a very flaky release of macOS. Query the web and you will be able to read a host of horror stories about peripherals that worked with OS X before 10.13 but not after. Only Apple can say why some work and others don't.
My opinion is that Apple released HS to a very demanding and inflexible schedule, and as its release date approached, some bugs and some features didn't make the cut. So, they released it anyway and are now dealing with the fallout. Blame others for your mistakes is a too common response to bugs, but in the meantime, work behind the scenes to fix your mess. Discussion on the net seems to expect many of these USB 3.0 problems will be fixed in 10.13.3, which is on 2nd beta. Apple has not announced a release date nor has it listed which bugs will be fixed. You can trust them but your mileage will vary. I worked around my problem and am now waiting for 10.13.3, but I'm not holding my breath, and since with the help of an engineer at Bombich (developer of Carbon Copy Cloner), I can afford to wait without rushing out to buy replacement peripherals. Apple, it's the firmware stupid, and your ability to deal with it, which is flawed in 10.13.2.