iMac won't open from bootable Ext back up drive
My iMac (Mid 2011, 3.1 Ghz intel Core i5) won't open when restarting from an external back up drive after changing the start up disk in System Preferences. The screen is black. The mouse cursor arrow is the only item on the black screen. No Apple logo or boot up progress bar is shown. I waited 12 minutes+ and nothing happened.
I depress the power button to shut down. After waiting about a minute, I hit the power button and the iMac starts up as normal. When looking at "About this Mac", it shows that the start up disk is my back up drive. After testing a few apps, everything appeared to be running fine from the back up drive (a partition of a HGST, 2GB SATA drive).
When I reverse the process and return the start up disk to the internal iMac HD, the same thing happens. Have to shut down with the power button etc.
I am running El Capitan 10.11.6. The back up drive is connected to the iMac with the FW 800 port. The back up drive was created with Carbon Copy Cloner 5.0.
I ran both Disk Utility and Disk Warrior on both the internal iMac HD and the external back up drive. There were no major problems with either drive. After running these apps, I tried again with the same result.
Any suggestions? Please help! Not comfortable without a bootable back up drive!
iMac, OS X El Capitan (10.11.6)