Hi, Kirk -
The KB wasn't clear about how to save the extensions - all I could see is an option to save as text.
If you are referring to this paragraph in KB Article #10182 -
"1. Before you rebuild the Desktop file, use the Extensions Manager to save a record of the extensions that are turned on. To do this, open the Extensions Manager control panel. Then choose Save Set from the Sets pop-up menu. When the Save Set dialog box opens, type a name for the selected extensions such as "My Extensions". When you close the dialog box, the name of your set is added to the Sets pop-up menu."
- that description is a bit incorrect when it comes to using Extensions Manager in at least OS 9.1 and later.
In OS 9.1 and later, extension sets are saved automatically whenever you close Extensions Manager. You can create a text file of what items are present, enabled, and disabled by selecting the Save Set as Text item in the File menu; this is just a record, a list that can be used for reference - it can be handy to have that, such as when solving for an extensions conflict.
The article is telling you to create a new extension set, one that can be saved just for rebulding the desktop file. To do that in OS 9.1 and later, in Extensions Manager click the Duplicate Set button; name the new set something appropriate, okay that window. Back in Extensions Manager, make sure the new set is shown in the Selected Set pulldown menu. Then turn all items off, and enable any specific items you want just for that set - such as the File Exchange control panel.
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Another trick that might work to get the icons on all the pdf files to be correct -
Put all of them into a single folder. Then duplicate that folder via Command-D (Duplicate in File menu), or by holding down the Option key and dragging the folder to a new location. With luck, the icons will be fixed in the new folder.
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By chance did you transport these files to your Mac using media that was not formatted as a Mac volume?