Well, believe it or not disks exhibit less wear when they're spinning as opposed to when they are constantly put to sleep and woken up.. Kind of like a light bulb, which will more likely burn out by being turned on and off all the time, rather than staying constantly lit. Simple physics.
Since the time capsule is technically a server, even claiming to use "server grade hard drives," Apple is probably just abiding by this principle and keeping the drive always spinning.
I stumbled upon this thread while looking for a reason my firewire drive is rattling a lot. It's stopped now after rebooting a couple time, and turning Time Machine on and off.
I've noticed Finder very busy at those times; I have no idea what it's doing.