....ALL the lines in a frame are simply scaled to the size you want. Because ALL the lines are used -- there inherently will be combing on motion!" WHEN THE SOURCE IS INTERLACED.
I'm well aware 540 is 1/2 of 1080 and for this reason 540p exports are slightly special.
But to put it simply, take a sample clip of 1080i and export it at 720p in im08, and im09, the im08 export will give me a 9/10 for quality, the im09 export gets a 1/10, the results are chalk and cheese, your explanations whilst understood are not the reason for this difference.
im09 appears to have affected QT in some way, if I take the same clip as above and used QT to export it to 720p instead of im with QT conversion, then prior to im09 my export was the same 9/10 as above, but after installing im09, the export from QT is now also 1/10 (This isn't the same for Final cut)
I also used to export my 1080i (1440) source video edited in im08 to AIC 1080i (1440), I figure some day I may want to use it if the tv ever supports better than 540p (720p). My exports were exactly the same as my source AIC after import (as they should be). If I now do the same in im09, they still come out interlaced but now they also have combing, go figure !!!