Hey Ernie,
I'm having the same problem. Twice now I have deleted these mass dupes (over 2700) that Mail re-downloaded from my POP Yahoo! account only to see them return. At this point I'm curious to see if they get downloaded again if I do not delete the dupes. From what others have said, it appears that they may in fact get downloaded again.
I checked my MessageUidsAlreadyDownloaded3 file and it's last update was after the most recent mass download. Assumingly then, it is being updated, but perhaps incorrectly. I may try doing as you suggest and deleting the file to allow it to be rebuilt.
Question though - my goal is to retain the copies of these messages that were already in my mail library. I want to retain the reply, forward, flagged, etc indicators that some of the messages have been tagged with from normal mail management. So, I don't really have use for the newly downloaded copies assuming it will only happen once more if this procedure does indeed fix the problem. If I delete the file, relaunch mail and get another mass download, should I be able to delete these new dupes without having that action set off another download (assuming the file recreation fixes the problem)? My thinking is that it should be ok as I would guess that the MessageUidsAlreadyDownloaded3 file doesn't force a re-download of messages just because you have permanently deleted them locally - under normal operation of course. Is this accurate?
Thanks.
Jeff
Message was edited by: Rgbyhkr