Also I did not run any fancy GUI apps since the unix tools will pick up hidden files, and hidden files will still consume disk space when checked with du and df.
Here a list of helpful system log entries:
Oct 14 15:51:03 vcs [0x0-0x4e04e].com.jetbrains.intellij[707]: 15:51:03,442 INFO [WorkspaceImpl] Saved workspace to [/Users/waldo/intellij-soapui-workspace.xml]
Oct 14 15:51:03 vcs [0x0-0x4e04e].com.jetbrains.intellij[707]: 15:51:03,444 INFO [DefaultSoapUICore] Settings saved to [/Users/waldo/soapui-settings.xml]
Oct 14 15:51:17 vcs KernelEventAgent[64]: tid 00000000 received event(s) VQ_LOWDISK, VQ_VERYLOWDISK (516)
Oct 14 15:51:17 vcs [0x0-0x2c02c].com.apple.Terminal[379]: Terminal has detected that you are running low on swap space. Large buffers have been trimmed in an attempt to reclaim memory....
Oct 14 15:51:17 vcs KernelEventAgent[64]: tid 00000000 type 'hfs', mounted on '/', from '/dev/disk1s2', low disk, very low disk
Oct 14 15:51:17 vcs KernelEventAgent[64]: tid 00000001 display
lowdiskwarning: generating verylowdisk warning for volume 'Mac Pro HD'
Oct 14 15:51:17 vcs KernelEventAgent[64]: tid 00000000 found 1 filesystem(s) with problem(s)
Oct 14 15:51:17 vcs Mail[2873]: Mail: SafetyNet not needed - wrongState:0
Oct 14 15:51:22: --- last message repeated 1 time ---
Oct 14 15:51:22 vcs [0x0-0x2c02c].com.apple.Terminal[379]: Swap space has returned to a safe level. Terminal is returning to normal scrollback buffer behavior
Oct 14 15:51:22 vcs KernelEventAgent[64]: tid 00000000 received event(s) VQ_LOWDISK (4)
Oct 14 15:51:22 vcs com.apple.AppleFileServer[263]: MDSChannelPeerRequest: (ipc/send) invalid destination port
Oct 14 15:51:23 vcs mds[62]: (Error) Server: Peer checkin failed -- no store for path '/Users/waldo'
Oct 14 15:51:23 vcs com.apple.AppleFileServer[263]: MDSChannelPeerCreate: (os/kern) invalid argument
Oct 14 15:51:25 vcs mds[62]: (Normal) DiskStore: Rebuilding index for /
Oct 14 15:51:26 vcs pbs[4116]: Malformed Services entries in Info.plist for Service at URL /Applications/TeX/LaTeXiT.app\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber\n The value for key NSTimeOut was supposed to be of type NSString, but instead it was of type NSNumber
Oct 14 15:51:26 vcs mds[62]: (Error) Server: Peer checkin failed -- no store for path '/Users/waldo'
Oct 14 15:51:26 vcs com.apple.AppleFileServer[263]: MDSChannelPeerCreate: (os/kern) invalid argument
Oct 14 15:51:26 vcs iCal[357]: Queue operation succeeded
Oct 14 15:51:33: --- last message repeated 2 times ---
Oct 14 15:51:33 vcs mds[62]: (Error) Server: Peer checkin failed -- no store for path '/Users/waldo'
Oct 14 15:51:33 vcs com.apple.AppleFileServer[263]: MDSChannelPeerCreate: (os/kern) invalid argument
Oct 14 15:51:33 vcs mds[62]: (Normal) DiskStore: Creating index for /
Oct 14 15:51:34 vcs Mail[2873]: Mail Operation: success
Oct 14 15:51:41 vcs Mail[2873]: Mail: SafetyNet not needed - wrongState:0
Oct 14 15:51:45 vcs KernelEventAgent[64]: tid 00000001 display
lowdiskwarning: verylowdisk warning for volume 'Mac Pro HD' removed
Message was edited by: Waldo Nell1