Left over remnants from software update left behind? I know early downloaders found they were getting timed out, had to bail/quit the update.
I never install Mac updates without first making a backup I can boot from (usually just a 10 minute update process) and booting from another drive (so I am running current OS and using the last Disk Utility rather than even 10.6.0).
Stand alone combo updates have another advantage, you can install to system volume other than the one you are currently booted from and running. Meaning run DU (and Disk Warrior) first and without even booting from your main hard drive, apply the update, repair permissions, then boot from it.
I may use Software Update for other programs, but I always download the standalone as well for future.
Because it was busy, I'd leave it for awhile. Then look for the downloaded package and any temp files.
If you had a backup image ("clone") you could always just restore to where it was previously.
Windows creates "restore check points" before starting an update, something that I've come to appreciate, easy to rollback drivers also.
One final thought, Apple First Aid in Disk Utility is safe, conservative, but has not eliminated the need for 3rd party utility that do more and can find more errors. Plus, even verifying a live system isn't perfect, so I wouldn't trust it to know if a system is okay. Only means it didn't find anything. Doesn't mean the file system is in perfectly good health.