I do understand, and no I don't think you're crazy. Having said that if you suspect malicious interference with your Mac or anything else, you're always better off inquiring here first (or somewhere else, provided you have confidence in the advice you may receive) before heading down some rabbit hole where you're only going to find more bizarre weirdness likely to feed into whatever paranoia may or may not be justified.
The very last thing anyone should ever do is to install some non-Apple "anti-virus" junk, unless of course it's merely for your own entertainment or to satisfy some morbid curiosity.
It's actually not accurate to say that's the very last thing anyone should ever do. Just don't do it, ever. For example I could describe my experience with "Kaspersky" specifically, but an accurate report would require the use of foul language so extreme no respectable website like ASC would permit it.
Does YOUR Time Machine back-up have both HD and HD1?
No, but I have a great number of TM backups and confess I just don't have the time to exhaustively inspect each one.
As I initially surmised, your question is a bit complicated and deserves more attention than I have been able to devote to it. In light of that limitation, here's what I recommend: First, be sure to obtain and use at least one additional, redundant, Time Machine backup device. You can use it in addition to your existing ones and TM will back up to it "in rotation". Satisfy yourself that TM is working properly with it, which might take a week or two of observing its operation. Then, when you are confident enough, take your existing "My Book", erase it using Disk Utility, and return it to Time Machine's rotation.
Unfortunately that will not address your question regarding the presence of "HD" and "HD 1" but there are too many complicating factors for me to provide anything more than a guess as to its appearance. The screenshot you posted is odd and doesn't resemble my TM backups, so all I can say is "that doesn't look right".
There are valid reasons to periodically erase a TM backup device. If nothing else the sheer number of files (well into the millions) just becomes overwhelming. When I realized some of my backups went all the way back to Lion, I erased them and started over. The length of time you want to keep backups is up to you, but in my case if I haven't required to restore something for several months, it's unlikely I ever will. So I erase it.