Do you have 3rd party drivers that you are talking about? Or you are assuming you lost the Apple drivers? I find it hard to believe the standard Mojave install would lose the Thunderbolt drivers. Besides if you have not Thunderbolt 3 drivers, then how did System Information know there was nothing attached, if it did not have a driver to query for that information?
This is what my Late 2016 15" Macbook Pro Mojave 10.14.6 system with 4 Thunderbolt 3 ports says about my Thunderbolt devices (and this is the same display when I've had devices plugged into my Thunderbolt 3 ports). This is Not my work Mac that provided the other screenshot

This screenshot never changed even when I had a USB-C external SSD, my USB-C to Lightning cable for my iPhone, a 4 portThunderbolt 3 dock (~$50) that has Ethernet, USB3 and video port.
None of them triggered the Thunderbolt System Information.
The previous screenshot that shows something attached to my Thunderbolt 3 ports was from my work Mac. It has the much more expensive 15 port CalDigit dock ($250) and that is when I saw something being attached to my Thunderbolt 3 ports.
So I'm not sure you are not seeing drivers for your Thunderbolt 3 ports.
Besides, I would expect to see the drivers listed under Software -> Extensions.
So lets get down to specifics. Is there a problem you are trying to work out and you are assuming it is a lack of drivers, or are you just looking at things and thinking something is wrong.
Maybe if we knew the problem, we could suggest something.