bankangde wrote:
... both of these Time Machines share space with a Copy Cloner backup. Under APFS there are two containers on each disc - one the CC backup and one Time Machine.
... If there was a fundamental problem in using only part of a disc for Time Machine, why has it worked well for so long?
Apple ( Types of disks you can use with Time Machine on Mac - Apple Support ) says you should reserve the entire disk for Time Machine. So using it also for CCC is probably a mistake, plus you now have both types of backups on the same physical drive so when that device fails, you lose all your backups.
"Note: The entire APFS volume is reserved for Time Machine backups. If you want to store files other than the Time Machine backup on the same physical device, use Disk Utility to create an additional APFS volume on the disk. The two volumes then share the available space."
Your setup with the containers and different types of backups on the same disk is not supported by Apple. I'm not surprised that the two types of backups have started to conflict. I suspect neither is a reliable backup anymore.
It might work for a while until one of the backups tried to reserve or use space that the other was using. We have no way of knowing without understanding the details of how CCC or Time Machine writes to different physical locations of the disk.
You should use one physical device for Time Machine backups and a separate physical device for CCC backups. If your backups are somehow compromised, that defeats the whole purpose of having a backup.