I had been using a Mac Mini w Intel processor sunning Sonoma and 5 HD's (3- 3.5" and 1-2.5" portable , all SeaGate, AND 1 2TB SanDisk SSD. One HD was periodically unmounting. Ran TechTools and confirmed it was dying, so discarded it. All the rest were operating fine including an 8TB Time Machine Backup drive.
I then upgraded to a MacBook M3 Pro Max. Migration was a pain. It would not connect to my MacMini, so, I chose to migrate from the Time Machine backup. This when smoothly.
Then I connected my other drives. Soon, there were reported problems with ALL drive! Time Machine could not backup to the Time Machine HD. It reported that it didn't have permission. The other drives continuously got the Improper removal message. The SSD gave a message that it could not be repaired (never asked it to be repaired), that I could copy files from the SSD, but could not alter them
All drives were formatted in the MacOS Extended Journaled format. Connecting the 3.5" drives would take 10-20 minutes topper in the finder. Connecting the 2.5' Portable HD connected quickly, but them started reporting improper removals. The SSD mounted quickly, but with the aforementioned error message.
Spent two sessions with online Apple Support, reinstalled the MacOS Sonoma, removed all potential interfering software (Sophos Antivirus, PIA VPN, TechTools, etc), then went to the Genius Bar.
They confirmed everything I've reported, with no solution.
In frustration, I purchased a LeCie HD in the Apple Store, reformatted it to APFS, and it mounted immediately. So, I went home, set the LaCie drive as my new Time Machine drive, backed up my MacBook.
I've now spend a few days trying to solve the remaining problems. The original TM backup file could not be copied from the original drive to the new TM drive. Eventually I had to give up and reformat the old TM drive to APFS, losing years backups. BUT, that drive has been performing flawlessly for 3 plus days now. I transferred files from problematic drive to the recently reformatted drives, then reprobated to problematic drive , then repeated the problem with the ned problematic drive. Each time a drive was formatted, it instantly mounted when connected to the MB Pro. BTW, the SanDisk SSD could NOT be formatted to the APFS format, but was reformatted to macOS Extended and is also working just fine.
Fingers crossed...