Terminal app says it has no permissions when it does

Hello,

I recently upgraded to Monterey version 12.7.1, and ever since I did I haven't been able to use my terminal to navigate and open files. To be explicitly clear, the terminal app is added to the list of apps that has file access, and all of my files have read/write permissions granted to my user. My user is also the main admin. If I try an operation, like ls, the terminal will not list the directory contents and will instead say "ls: .: Operation not permitted".

Possibly related, I don't know, is that Adobe PDF reader, Microsoft Office suite, and my LaTeX editor will no longer open and run because they apparently do not have permissions either (despite being on the list of apps will permissions for full disk access).

Please help! This is very frustrating.