I think my problem is similar. I have a 27" iMac set to sleep "never" but I do put the display to sleep and I enable "Put hard drives to sleep when possible" - I have a FireWire 800 connected 3TB Seagate drive used exclusively for TM backup. (I'm current on OS X 10.8)
Although I don't ever see the improper eject warning, about once a week I do get TM errors along the lines of "Time Machine is unable to create a directory" or something similar.
Disk Utility can often repair the volume format, but not always (in those cases, I reluctantly reformat and do a full backup). The Disk Utility messages always indicate disk format problems, but the exact symptoms vary. Often there are multiple instances of multiple problems.
Here's why I suspect sleep - I'm on and off my computer all day and I've NEVER have had a daytime backup fail. But overnight backups routinely fail - at least once a week. And if I am "pro-active" about checking the volume with Disk Utility, there's usually something minor to repair most mornings.
I suspected the physical drive (which is new), so I obtained a replacement drive under warranty. The replacement drive failed on its first night. Here are logs showing the successful initial backup followed by a failure.
Any ideas on what is going on or how to isolate this problem?
Thanks in advance!
Jbenni
Logs from Time Machine Buddy (initial backup):
Starting manual backup
Backing up to: /Volumes/JBenniMac Backup/Backups.backupdb
Forcing deep traversal on source: "Macintosh HD" (mount: '/' fsUUID: 34226B92-E59A-3CE9-8EB2-A2731CC50CEC eventDBUUID: EE22D25B-2065-44CA-B75E-91B1C1ED61D0)
Backup content size: 586.83 GB excluded items size: 38.72 GB for volume Macintosh HD
Found 2136396 files (548.11 GB) needing backup
657.74 GB required (including padding), 1.4 TB available
Waiting for index to be ready (100)
Copied 65.8 GB of 548.11 GB, 1276371 of 2136396 items
Copied 161.38 GB of 548.11 GB, 1756587 of 2136396 items
Copied 286.02 GB of 548.11 GB, 1859362 of 2136396 items
Copied 436 GB of 548.11 GB, 1881544 of 2136396 items
Copied 1966217 files (490.86 GB) from volume Macintosh HD.
Using file event preflight for Macintosh HD
Will copy (5.2 MB) from Macintosh HD
Found 411 files (6.2 MB) needing backup
6.14 GB required (including padding), 899.27 GB available
Copied 5467 files (11.4 MB) from volume Macintosh HD.
Created new backup: 2012-08-21-023557
Copying Lion Recovery set
Starting post-backup thinning
No post-back up thinning needed: no expired backups exist
Backup completed successfully.
The computer was idle (but various automatic things like email arrivals and calendar events happen). The next backup shows:
Backing up to: /Volumes/JBenniMac Backup/Backups.backupdb
Using file event preflight for Macintosh HD
Will copy (407.6 MB) from Macintosh HD
Found 2368 files (530.7 MB) needing backup
6.72 GB required (including padding), 898.8 GB available
Stopping backup.
Error: (-43) SrcErr:NO Copying /Applications/3ivx to /Volumes/JBenniMac Backup/Backups.backupdb/jbenniMac/2012-08-21-034140.inProgress/24970D79-226F-49 47-9D99-1E9A24E9535E/Macintosh HD/Applications
Copied 9 files (Zero KB) from volume Macintosh HD.
Copy stage failed with error:11
Backup failed with error: 11
Starting automatic backup
Backing up to: /Volumes/JBenniMac Backup/Backups.backupdb
Using file event preflight for Macintosh HD
Will copy (407.8 MB) from Macintosh HD
Found 2408 files (530.8 MB) needing backup
6.72 GB required (including padding), 898.8 GB available
Stopping backup.
Error: (-43) SrcErr:NO Copying /Applications/3ivx to /Volumes/JBenniMac Backup/Backups.backupdb/jbenniMac/2012-08-21-034140.inProgress/661B27F4-2484-44 AA-BB1D-6A7DCE1BBF97/Macintosh HD/Applications
Copied 9 files (Zero KB) from volume Macintosh HD.
Copy stage failed with error:11
Backup failed with error: 11
Starting automatic backup
Backing up to: /Volumes/JBenniMac Backup/Backups.backupdb
Error: (5) setxattr for key:com.apple.backupd.SnapshotState path:/Volumes/JBenniMac Backup/Backups.backupdb/jbenniMac/2012-08-21-034140.inProgress/BD730A2B-6843-42 DE-AA82-334276DA1B18 size:2
Using file event preflight for Macintosh HD
Will copy (407.9 MB) from Macintosh HD
Found 2443 files (531 MB) needing backup
6.72 GB required (including padding), 898.8 GB available
Copied 0 files (Zero KB) from volume Macintosh HD.
Copy stage failed with error:11
Backup failed with error: 11
Starting automatic backup
Backing up to: /Volumes/JBenniMac Backup/Backups.backupdb
Error: (-36) Applying backup protections to /Volumes/JBenniMac Backup/Backups.backupdb/jbenniMac/2012-08-21-034140.inProgress/701819AD-0B49-4E B7-9ADB-067A4463D87E
Error