Many thanks to everyone. I think I have found a temporary solution. Below is a summary. Someone will hopefully find it helpful.
SUMMARY:
Hardware:
Powermac G5 Quad. LCS is labeled Cooligy with 2 black pumpsfrom Delphi. CPU unit is processor type 2 as shown in the Apple Service manual.
Symptoms:
The fan activity of the computer started to become very annoying for no reasons. The iStat Pro widget reported 30 degrees Celsius for CPU A and 45 C for CPU B when the system was "idle". Under light usage there was a thermal disparity of 45 C for A and 60 C for B. Temperature would reduce to 50 C, but causing persistent fan activity of over 2500 rpm and pumps running at 2700 rpm, making the system unusable.
Troubleshooting:
I removed the CPU unit from the box according to the Apple Service manual. I cleaned the system with compressed air, removed the 2 CPU boards and renewed the CPU thermo paste. There were no signs of any coolant leakage or corrosion. The system looked spot on.
I used Noctua NT-H1 thermo paste. You only need to apply the size of a small corn seed. Due to how the CPU and heat transfer module are mounted, it will displace pretty much all of it.
After reassembling the system it started up fine, but CPU B would very soon overheat, causing the red Overtemp and Quickstop LED to go on. It got worse after a couple of system restarts, up to the point where the system would not startup anymore. Overtemp and Quickstop turned on right after power on, even when the system was off for an hour. Switching the cpu's around did not affect the problem.
Problem:
The CPU's are fine, but the liquid cooling system is failing due to some internal defect. Removing the unit and operating it after a longer break or in a different position seemed to have made the problem more apparent.The hoses of CPU B are warm; the ones for CPU A are not. There is obviously nocoolant circulation for unit B, causing it to overheat very quickly.
Conclusion:
I removed CPU B from the system by removing the complete CPU board from the cooling unit. The system now identifies as Dual Core G5 2.5 GHz. Thermal calibration from the Apple Service Diagnostic CD 2.6.3 ran successfully, unlike with both CPU boards installed. CPU A reports 40 C when idle, and up to 55 under high workload. The fan activity seems normal again. I can remove the CPU unit blindfold now.
CPU B is located at the bottom, close to the absorbent pad and power supply. The system will not startup with CPU A removed. Without CPU B, the system will run fine, but the red CPU insert LED will be on permanently. I had to reset the PRAM to get mouse support after starting from the Apple Service Diagnostic CD.
Comments:
There are reports about LCS repair and coolant refills available on the web. These systems suffered coolant leakage. The LCS in the G5 Quad is improved. It's a sealed system and certainly not to be maintained.There is no maintenance information available about how to refill the coolant properly, which could result in coolant leakage. The coolant liquid is very toxic and takes special handling.
There is probably not enough room in the box for conventional air-cooling of 2 processors under reasonable fan activity.
The Powermac G5 Quad is a masterpiece, if only it would last longer or could be maintained. The vendor, not Apple, told me that 5 -7 years is an average lifetime for a G5 Quad. I think it is unusual that a computer requires a repair that is more expensive than a complete new system after 5 years. It was not a $ 50 item. Unfortunately there is no reasonable Apple contact were I live.
At least I got the system working again, without 2 processors though. Only time will tell how long the cooling system will last until it breaks down completely. I currently need a system with a SCSI adapter and would rather buy an iMac than Mac Pro in the future. I'm disappointed that Apple does not offer a special G5 Quad repair policy.
Thanks.