Well, I think that just by posting here which I never do... gave me luck.
I finally got out of the deep stuck hole I was in, so I though I should share what I learned from right here inside the many discussions.
By working with three different tools to analyze and troubleshoot the issues.
-The configuration files generated by setting for wiki, etc.. and web because these are kind of sharing ports.
-The console error messages on the webserver, reading these messages will give you a clue of what might have happened, but you might want to look at it while setting things up, for instance turn services off and on.
-The Admin app
-Terminal
I also learned the way to make the server regenerate configuration settings is by setting the ssl certificate to none, let it run and set it back to your ssl cert.
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I believe the issue I had was caused by the secured pages, port 443 website and wiki conflicting, I found on the apache2/sites pages for the sites on each port and defaults to reset.
Since my issue was the website and wiki, ical,etc,... named (any) using the same 443, I just deleted the one for my site, remember the extension that will be used is ending on .conf
The error I found on the console was actually a warning saying:
[warn] RSA server certificate CommonName (CN) `server.domain.com' does NOT match server name!?
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My troubleshooting steps:
1.- Turned off services
2.- Reset the configuration files by copying the defaults on top of the .conf
3.- Reconfigured the server by setting the ssl cert on hardware in the server app to "none" -letting it run and back to "your ssl cert" - also remember to check the cert used by each service, on custom.
4.- Turned the Profile Mgr to on
5.- Look at the Profile Mgr in safari, left the safari window open
6.- Open a new safari window and set the wiki to :"on", left the safari window open
7.- Open a new safari window and set web to "on"
When I turned the web to on it was breaking profile mgr and wiki as well, so thats how I notice web was conflicting with the collaboration services.
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I really hope this can help somebody else, I tried to make it easy to read, because I spent a long time trying to read to find solutions out there, so this might be helpful.
Thanks,
Maru 🙂