Same here. MBA and MacMini Server.
Today I called ACCS to inquire about this issue. The first guy couldn't really help me referring me to his superior in the tech center to whom I was talking about half an hour discussing possible solutions.
PRAM/ SMC reset, which I already performed at the time. Then he told me to delete the com.apple.PowerManagement.plist in /library/preferences/system management > reboot. In sysprefs set 'Display Sleep' to 'Never' and in sysprefs/ displays: activate 'Automatically adjust brightness'.
Later he consulted with another colleague, who apparently told him - and that's the interesting part - that besides the firmware update for the TB port already released, there might also be a seperate firmware update for the cable in the near future. I was no more than surprised he let information about "future releases" slip this easily to a customer. Normally they say, they don't know.
He also said, that if one uses the seperatly sold extension cable to connect the display with the computer, only the plug connected to the Mac will be updated, not the plug at the other end which is stuck to the display. So in order to update both plugs, you'll have to reverse direction on the cable and do the update again.
I'm really not sure what to make of this, and whether it's related to this issue or not, but it sounds reasonable to think a cable firmware update could bring a solution to these random blackouts.