My setup has been a MacBook Pro Retina with two daisy chained Thunderbolt Displays.
- The firmware of #1: Firmware Version: 22,2
- The firmware of #2: Firmware Version: 26,2
but the order of the displays doesn't matter. If the MacBook Pro went into sleep mode for a longer period, waking up one of the display often didn't work
I connected the two Displays to my new Mac Pro 2013 again daisy chained and had exactly the same issue. I doubt it has anything to do with the Firmware of the computer. I'd rather say it has something to do with the differences in firmware of the displays.
In regards of the power quality: All of my displays are connected to an APC UPS with highest quality power outlets - all grounded. The Mac Pro is connected to the same UPS.
Please check, if you also have discrepances in your firmware (About This Mac > System Report > Thunderbolt)
I'd like to test what happens if I diectly connect the displays, but the Thunderbolt cord is rather short to allow this with my setup.
Thx