I dont really have time to go through all this, but it seems the discussion has dwindled down to your m4p file in the sample book.
I see no mention of both book and sample having issues.
If it is only the sample book with issues, is it worth all the stress and anguish! Why not delete the file from the sample - remember it is a sample and people dont expect every interactive event to be present.
In the book description you can state that the sample is supplied less some of the "attractive interactive elements of the full book".
As an aside, the question of long standing issues, - "feedback", as some of the long time served helpers on here always seemed to promote, is basically a waste of electric.
There are a number of issues present since day one of iBA when there were literally thousands of folk on this group daily looking for guidance... virtually none of the most requested "fixes" have ever been made. The most obvious is moving a single page!
Like all call centres the Apple support ops have a script sheet, like old Bacic coding, if this, than that! No real working knowledge of iBA - as is oft demonstrated when tickets are issued and the "victim" tries to get advice from support.
Virtually every issue ever raised has a solution/workaround already in past posts, the few , like yours, that persist are apparently not worth the time it takes an Apple software engineer to hit a fix and update.
Let us know the outcome.