I would be very interested to know if anyone here did not use Migration Assistant.
As I reported earlier on this board, I tried both wired and wireless mice and keyboards. As I survey my office, this occurs on three new Mac Mini servers which used Migration Assistant. It didn't happen on a MB Pro Retina, and older MB Pro, and a new MB Air where didn't use M.A.
It clearly happens to new and older Macs running Mountain Lion.
It's not a software issue from what I can see on this Board. It happens at different times for different users. In my case, it's upon awakening on all three mac minis regardless of the app used. Right now, the leading suspect is Migration Assistant unless some people report they're experiencing it without it.