So here’s an update on how the genius bar apt went. It started off good with only a 2 min wait. The genius that was helping me was very friendly and listened intently when I described the lagging issues and the troubleshooting that I had done. I told him I contacted AppleCare in December about this problem and was told to wait for an update for a fix and that has come and went with no improvement. I then told him I had run a clean install, without transferring any data to the mac or setting up my iCloud, and the lag was still present. I informed him that an SMC reset and PRAM reset would temporarily alleviate the issue. He informed me that he had never heard of this particular issue, but knew of the safari lag issue and knew that it was being updated to improve scrolling.
I was successfully able to demonstrate the lag to him and he wanted to compare it to a display model. The display model was the base early 2013 and mine is the base model mid 2012. We both acknowledged that the base model was smoother in the UI and didn’t show any lag. Comparing them side by side we both could see the lag in my retina.
He stated that he believes that it is a software issue, but hasn’t heard if Apple recognizes the issue and is currently working on it. But, to be safe he recommended that I leave the computer with them and they would run their extensive hardware testing that would run for two days straight to make sure everything is performing as expected with the machine.
So, basically I left it with them and should hear something in 2-3 days. He said if they find a problem with any of the hardware that it would be repaired for me. Kind of discouraging cause it was clear that something was wrong with my machine. I hope they find a hardware problem that may resolve it.