If your Mouse stutters, you have issues that are 'software' realated, in the meaning that something is affecting 'thread 0' (the kernel) is such a way, that the lowlevel mouse handling is also affected. Given that the mouse in OS X (and classic) is handled at a very low level, this means something is not releasing system resources as it should.
This could be kernel extensions (drivers) or other software running.
My suggestion to try on a clean system, or on a clean user account, is in order to filter such things out!
The easy solution, is to start with a clean user, it takes about 5 sec to create in SysPrefs, and open FCPX from there and your projects (just make sure your projetcs/events are not in the other user folder..)
If that still mess up, try a clean system install - on another partition/disk. You can easily make a 30GB partition on your boot disk if you have available space.
AHT will not see system related stuff like this, only basic hardware issues.