Thank you for the update, RV6flyer. Would you care to elaborate?
From your previous posts, I understand that you tried Rickster_G4 solution. If I understood that correctly: sync properly (so that all the Books are in iTunes), then uninstall iBooks 3 from iPad, then download again iBooks 3 in iTunes, then sync iPad to iTunes leaving Books out (uncheck Books in iTunes Books tab), then restart iPad, then start iBooks 3 (without any books), finally sync everything (that is with Books included).
When you start iBooks 3 now, it does not crash at start up and you can see all the books. Have you tried opening some and it doesn't crash and all is I used to be, not noticeably slower or any other odd behaviour?
Just to be sure, are you doing this with an iPad1?
I would like to try that, but I have installed the previous version, and I am still slightly afraid of losing things - I have many and I have been through this once. thanks in advance.