Sbailey,
Are you an Apple Employee? What facts are backing up your statement that "iOS 6.1 itself is not the issue"? You haven't mentioned anything about root cause. A particular App? One of the carriers? Is my whole "disk" being indexed? Whose code is spinning the processor so hard that the iPhone stays abnormally warm?
My Responses to your "Solutions":
1: close all apps from multitask tray,
Tried that. Battery still drains at 15% per hour of "Screen Off" state.
2: perform settings>reset>reset all settings. This will not erase your apps or data but will default old settings to their new states for the new iOS.
No. This isn't helpful in determining the ACTUAL bug. It might mask it, for a time. Or it might make the bug go away. But until Apple states "Here's the problem, and here's the actual solution" you are just fireing a shotgun int he dark hoping to hit a bug.
3: Select "setup as new" if prompted when the device reboots. (it isnt really setting up as new so dont worry).
Again, No. That's a pain in the ***. And not helpful in finding the root cause.
4: Allow to drain battery until the device turns itself off
What is this supposed to do? I've shut it down twice (hard power off). And still ***** the battery dry (and makes a lovely handwarmer as the CPU is probably being spun at 100% full time)
5: Charge it back up undisturbed for at least 1.5 hrs after it shows 100% (overnight would be best)
Yeah, did that. I have to keep it on charge constantly now, since I only get 5 hours of standby now. But what exactly happens in the software by having it "sit undisturbed for 1.5 hours after it show 100%"?
I think you are making up answers without any facts.