No.
It isn't an ATX motherboard. It is, quite possibly, the farthest thing away from the ATX standard that you could hope for.
The hole mountings are different, and the Powersource isn't ATX. And you've got the FBDIMM risers that need support from the case chassis so they don't damage the mainboard connectors.
Even if you did manage to somehow put it in a seriously hacked up ATX case, it would have to be probably more then 5U tall, since the Mac Pro has the large tower-like heatsinks and again, the FBDIMM risers.
It would probably be easier to just get a flat rackmount support and sit the Mac Pro ontop of that, in the rack. Yeah, it takes up a lot of room, but there isn't any other way to do it.
-S'Captain