I also noticed a system problem with a 2012 Mac Mini, the boot into single user mode showed "Pci pause: SDXC"
as this was a new 'feature'/bug! to me I was able to reverse the most recent change that I made to my Mac mini, which was playing in the Energy Settings pane of Control panel (OS X Mavericks 10.9.5 Build 13F34) which I tend to think may be responsible for my problems?
I had recently set to 'Selected' Put hard disks to sleep when possible
'NOT Selected' Wake for network access
'Selected' Enable Power Nap
and I set Computer sleep: to Never
perhaps co-incidentally I then got quite annoying pauses/freezes of normal computer use & the "Pci pause: SDXC"
so I set everything power-saver back to
'NOT Selected' Put hard disks to sleep when possible
'NOT Selected' Wake for network access
'NOT Selected' Enable Power Nap
and I set Computer sleep: to 3hrs
and it is performing as it used to!
more hardware details Macmini6,1 , 2.5GHz Intel Core i5, 10GB 1600MHz DDR3, HDD Seagate Momentus 1TB hybrid (Model: ST1000LM014-1EJ164), Storage 2 x USB3 ext HDD MyBook 2TB (great) & MyBook 3TB (Don't buy this - it's encrypted/compressed drive - no longer readable without the original case)