I have had this same problem for a while in my iPad with Retina display. Looking at the device console in Apple configurator 2 during the popup, is shows some errors about baseband reset and resetting SIM information. I'm not sure if this is a hardware problem or problem in device drivers, but very annoying indeed.
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:3:IPv6: handleBasebandOff: <0x15d8ecf0> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Resetting SIM information due to BB reset/loss of information
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I QMI PBM client has been stopped
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:0:QOSIPv4: handleQOSClientDeregistered: <0x15e7ade0> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Phone book driver has gone down, clearing off all the phone book model
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:3:IPv4: handleBasebandOff: <0x15d8e6d0> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I SIM status lost and is unknown
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I isEapAkaSupported_sync: sim is not ready
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I SIM states haven't settled yet, waiting until they have
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I 5wi.SDM: handleSimsChanged_sync: sim state changed to kSimStateUnknown.
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Setting GW SIM State from kSimStateNoSim to kSimStateUnknown
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:2:IPv4: handleBasebandOff: <0x15d8b640> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I 5wi.ct: operator(): 2 -> 2
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I GW SIM card state has moved away from ready, clearing the current ICCID
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:0:QOSIPv6: handleQOSClientDeregistered: <0x15e7b0f0> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I 5wi.ct: checkConnectivity: Connectivity(false): [ConnectionAvailable(false), No BackoffTimer(true), allowedPdpType(true)]
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I Audio client deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Clearing the active ICCID: '<private>'
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:3:QOSIPv4: handleQOSClientDeregistered: <0x15d8f6b0> deregistered
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I 5wi.ct: checkConnectivity: Connectivity(false): [ConnectionAvailable(false), No BackoffTimer(true), allowedPdpType(true)]
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Driver is not ready
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Evaluating Network Selection: RoamingResult::kUnknown on RAT kRatUnknown
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I DATA.QMIContext:2:QOSIPv4: handleQOSClientDeregistered: <0x15d8cbd0> deregistered
Dec 9 07:21:16 iPad CommCenter(CommCenter)[24] <Notice>: #I Observed files list for kSimCardGw ended up empty, probably due to unknown sim type; skipping for now
Dec 9 07:21:16 iPad CommCenter[24] <Notice>: #I Ignoring the SIM state indication for Card kSimCardGw, SIM Type kSimTypeUnknown and State kSimStateUnknown