Could it be related to the fact that the SSD is listed as disk two in the EtreCheck report?
NO. The following is "My" SSD information on my Late 2011 Macbook Pro 2.2GHz i7 quad core. It is not much different from yours
Disk Information: ℹ️
Samsung SSD 840 EVO 1TB disk0 : (1 TB)
S.M.A.R.T. Status: Verified
EFI (disk0s1) <not mounted> : 210 MB
Recovery HD (disk0s3) <not mounted> [Recovery]: 2.18 GB
BobBookProSSD (disk1) / [Startup]: 997.21 GB (436.95 GB free)
Encrypted AES-XTS Unlocked
Core Storage: disk0s2 997.55 GB Online
Mine Macbook Pro with SSD, TRIM enabled takes about 12 seconds to boot.
Here is my System Profile Information on my SSD
Intel 6 Series Chipset:
Vendor: Intel
Product: 6 Series Chipset
Link Speed: 6 Gigabit
Negotiated Link Speed: 6 Gigabit
Physical Interconnect: SATA
Description: AHCI Version 1.30 Supported
Samsung SSD 840 EVO 1TB:
Capacity: 1 TB (1,000,204,886,016 bytes)
Model: Samsung SSD 840 EVO 1TB
Revision: EXT0BB6Q
Serial Number: xxxxxxxxxxxxxxx
Native Command Queuing: Yes
Queue Depth: 32
Removable Media: No
Detachable Drive: No
BSD Name: disk0
Medium Type: Solid State
TRIM Support: Yes
Partition Map Type: GPT (GUID Partition Table)
S.M.A.R.T. status: Verified
Volumes:
EFI:
Capacity: 209.7 MB (209,715,200 bytes)
BSD Name: disk0s1
Content: EFI
disk0s2:
Capacity: 997.55 GB (997,549,998,080 bytes)
BSD Name: disk0s2
Content: Apple_CoreStorage
Recovery HD:
Capacity: 2.18 GB (2,176,696,320 bytes)
BSD Name: disk0s3
Content: Apple_Boot
Volume UUID: xxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxx